cimcb-lite 0.0.19

This is a pre-release.

 ### cimcb lite cimcb_lite is a lite version of the cimcb package containing the necessary tools for the statistical analysis of untargeted and targeted metabolomics data (currently for binary classification).

## Installation

### Dependencies cimcb_lite requires: - Python (>=3.5) - Bokeh (>=1.0.0) - NumPy - SciPy - scikit-learn - Statsmodels - tqdm

### User installation The recommend way to install cimcb_lite and dependencies is to using conda: `console conda install -c cimcb cimcb_lite ` or pip: `console pip install cimcb_lite ` Alternatively, to install directly from github: `console pip install https://github.com/KevinMMendez/cimcb_lite/archive/master.zip `

### Quick Start

### Tutorial Open with Binders:

[](https://mybinder.org/v2/gh/KevinMMendez/BinderTutorial_Workflow/master?filepath=BinderTutorial_Workflow.ipynb)

### API For futher detail on the usage refer to the docstring.

#### cimcb_lite.model - [PLS_SIMPLS](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/model/PLS_SIMPLS.py)

#### cimcb_lite.plot - [boxplot](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/boxplot.py) - [distribution](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/distribution.py) - [pca](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/pca.py) - [permutation_test](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/permutation_test.py) - [roc](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/roc.py) - [scatter](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/scattern.py) - [scatterCI](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/scatterCI.py)

#### cimcb_lite.cross_val - [kfold](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/cross_val/kfold.py)

#### cimcb_lite.bootstrap - [Perc](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/bootstrap/Perc.py) - [BC](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/bootstrap/BC.py) - [BCA](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/bootstrap/BCA.py)

#### cimcb_lite.utils - [binary_metrics](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/binary_metrics.py) - [ci95_ellipse](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/ci95_ellipse.py) - [binary_metrics](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/binary_metrics.py) - [knnimpute](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/knnimpute.py) - [load_dataXL](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/load_dataXL.py) - [nested_getattr](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/nested_getattr.py) - [scale](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/scale.py) - [table_check](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/table_check.py) - [univariate_2class](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/univariate_2class.py)

### License cimcb_lite is licensed under the ___ license.

### Authors - Kevin Mendez - [David Broadhurst](https://scholar.google.ca/citations?user=M3_zZwUAAAAJ&hl=en)

### Correspondence Professor David Broadhurst, Director of the Centre for Integrative Metabolomics & Computation Biology at Edith Cowan University. E-mail: [e-mail]

### Citation If you would cite cimcb_lite in a scientific publication, you can use the following: ___