Genetic circuit design using Monte Carlo tree search
Project description
CircuiTree
Genetic circuit design using Monte Carlo tree search
Installation
From a package repository
To install using pip
:
pip install circuitree
From the GitHub repository
To install and use circuitree
from the GitHub source code, first clone the repo into a directory.
git clone https://github.com/pranav-bhamidipati/circuitree.git[ dir_name]
Then, you can build the environment using the command-line tool poetry
. Instructions for installation can be found here.
From the main project directory, run poetry install
to install a virtual environment with circuitree
installed. The easiest way to use this environment is to run it interactively with poetry shell
. Alternatively, you can run a command in the virtual environment with poetry run <command>
. For instance, to launch a Jupyter notebook with circuitree
pre-loaded, run poetry run jupyter notebook
.
Usage
See the quick-start demo.
Project details
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