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CLeaning to Analysis: Reproducibility-based Interface for Traits and Exposures

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CLeaning to Analysis: Reproducibility-based Interface for Traits and Exposures

Examples

Run an EWAS in a few lines of code

docs/source/_static/code/quick_ewas.png

More realistically, perform some QC first:

docs/source/_static/code/filters.png

Genotype data is supported via Pandas-Genomics

docs/source/_static/code/gwas.png

Installation

In order to use the r_survey regression_kind in the ewas function, R must be installed along with the survey library.

  1. Install R and ensure it is accessible from the command line. You may need to add its location to the PATH environmental variable.
  2. Use install.packages in R to install the survey library.

Questions

If you have any questions not answered by the documentation, feel free to open an Issue.

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