clinvar-tsv 0.3.0

Python 3 library for accessing and managing BioMedical sheets

Clinvar-TSV

The code in this repository allows to first download,t hen convert ClinVar XML files into TSV files (one for b37 and b38). The TSV files will contain one entry for each ClinVar <ReferenceClinVarAssertion> entry with important information extracted from ClinVar. The code is used by bihealth/varfish-db-downloader.

The project was originally based on macarthurlab/clinvar.

Clinvar-TSV Changelog

v0.3.0

• Various refinements of the code.

• Adding tests and CI.

v0.2.2

• Fixing bug with quotes.

v0.2.1

• Fixing bug in setting clinical significance flags.

v0.2.0

• Complete refurbishing of XML parsing, using models based on python-attrs.

• Removing old tests.

v0.1.1

• Fixing installation of Snakefile.

v0.1.0

• First actual release, versioning done using versioneer.

• Everything is new!