CluBCpG is a software package built to analyze whole genome bisulfite sequencing (WGBS) data
Project description
CluBCpG: Cluster-Based analysis of CpG methylation
What is CluBCpG?
CluBCpG is a software package built to analyze whole genome bisulfite sequencing (WGBS) data. This toolkit will divide each chromosome into small user-defined intervals, extract all WGBS reads within those intervals, cluster them based on identity, and write a final report to the use containing all identified CpG methylation patterns.
How do I use this?
Full documentation is available on ReadTheDocs
Requirements
- Python >= 3.5
- Installation of Samtools on your PATH
Install
- (Optional, but HIGHLY recommended) Create a new python virtual environment and activate that virualenv
- Execute
pip install clubcpgto install the package. Requirements will automatically be installed if not already present.
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