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CMSIP: Hydroxymethylation anlaysis of CMS-IP data

A scalable, accurate, and efficient solution for hydroxymethylation analysis of CMS-IP sequencing data.

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Workflow of CMSIP.


CMSIP has been deployed in Bioconda at It is encouraged to install CMSIP from Bioconda, and the following channels should be added. Namely,

conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda install cmsip

Example configuration file

An example configuration is cms.yaml under the root of this repository.

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