CNO (Cell Net Optimiser): Manipulate, Visualise and Optimise Biological Networks to Perturbation Data.
Project description
cellnopt/cno
- Note:
Cellnopt is tested under Python2.7 and portage to Python3 is on the way
- Contributions:
Please join cellnopt github project and share your notebooks
- Issues:
Please use cellnopt issues and bug report
- Documentation:
Some documentation (mostly API) are also available on pypi
This is a stable version that contains datasets and tools to manipulate models and data sets used in CellNOpt project. The sub-package cno.io is ready and is a replacement for cellnopt.core package. cno.datasets sub-package is a replacement for cellnopt.data package.
As for the formalisms, pipelines are provided for each formalism and are available in the boolean, ode and fuzzy packages.
- See also:
http://www.cellnopt.org for the context.
Installation
From Pypi / pip:
sudo pip install cno
From github:
# Get the source either from http git clone http://github.com/cellnopt/cellnopt.git # or SSH # git clone git@github.com:cellnopt/cellnopt.git cd cellnopt sudo python setup.py install
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