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CNO (Cell Net Optimiser): Manipulate, Visualise and Optimise Biological Networks to Perturbation Data.

Project description

Have a look at

  • www.cellnopt.org for the context

and those notebooks - https://github.com/cellnopt/cellnopt/tree/master/notebooks - https://github.com/cokelaer/euroscipy_proceedings/blob/master/papers/cokelaer/cokelaer.rst

To be provided:

  • [x] pre-processing tools
  • [ ] boolean analysis
  • [ ] discrete time analysis
  • [ ] fuzzy analysis
  • [x] connection to cnor feeder connection
  • [ ] ode analysis
  • [ ] Visualisation
  • [ ] data : move cellnopt.data into here
  • [x] move cellnopt.admin to here ?
  • [ ] move cellnopt.core as cellnopt.io in here ? - [x] midas - [x] sif/reactions - [x] cnograph - [ ] normalisation - [x] compression - [ ] mapback - [ ] models - [x] cna
  • [ ] R packages available in CellNOptR repository - [x] boolean T1 - [x] boolean T2 - [x] fuzzy - [x] discrete time - [x] ode
  • [ ] optimisation and modelisation - [ ] boolean T1 - [ ] boolean T2 - [ ] fuzzy - [ ] discrete time - [ ] ode

Project details


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