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Python library for copying DNA components with mutations

Project description

Co is a Python library for altering annotated DNA sequences. It keeps track of components and lifts over feature annotations when a component is “mutated” by applying a series of mutations. With co you can build new consensus sequences for cloned organisms and follow changes to feature annotations within a lineage.

>>> from co import Component
>>> from co.mutations import *
>>> hi_x = Component('Hello X!')
>>> hi_x.seq
Seq('Hello X!', Alphabet())
>>> hi_world = hi_x.mutate([Mutation(6, 1, 'world')])
>>> hi_world.seq
Seq('Hello world!', Alphabet())

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Filename, size & hash SHA256 hash help File type Python version Upload date
co-0.1.0.tar.gz (16.3 kB) Copy SHA256 hash SHA256 Source None May 27, 2014

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