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# COBRA utils

[![PyPI version](https://badge.fury.io/py/cobra-utils.svg)](https://pypi.org/project/cobra-utils/) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3470217.svg)](https://doi.org/10.5281/zenodo.3470217)

This is a series of utilities to use together with [COBRApy](https://github.com/opencobra/cobrapy). The goal of this tool is to make easier the usage of COBRApy.

## Installation

To install this package from a Unix OS, run:

` pip install cobra-utils `

To install this package from Windows, run: ` python -m pip install cobra-utils `

In case you downloaded the source code, in a Unix OS run:

` pip install -e . `

or in Windows: ` python -m pip install -e . `

## Examples * [Loading a model and retrieving reactions information](./notebooks/Ecoli_Rxn_Information.ipynb) * [Reporter metabolites from differential expression in two strains of E. coli](./notebooks/Ecoli_Reporter_Metabolites_Pathways.ipynb)

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