codon usage bias analysis tools
Project description
codon-bias
This package provides analysis tools for genomic sequences, focusing on protein coding regions, translation efficiency and synonymous mutations. These include implementations of popular models from the past four decades of codon usage study, such as:
- Frequency of Optimal Codons (FOP)
- Relative Synonymous Codon Usage (RSCU)
- Codon Adaptation Index (CAI)
- Effective Number of Codons (ENC)
- tRNA Adaptation Index (tAI)
- Relative Codon Bias Score (RCBS)
- Directional Codon Bias Score (DCBS)
- Codon Usage Frequency Similarity (CUFS)
installation
pip install codon-bias
documentation
Read on readthedocs.
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Source Distribution
codon-bias-0.1.0.tar.gz
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