the COLOC method by Giambartolomei et al.
Project description
coloc
An implementation of the COLOC method for colocalization of GWAS and/or eQTL signals by Giambartolomei et al.
Installation
pip3 install coloc
or
pip3 install --user coloc
Example usage
from coloc import coloc, print_coloc_result
help(coloc)
print_coloc_result('not colocalized', *coloc([1, 4, 9], [9, 4, 1]))
not colocalized
PP0: [||||| ] [ 0.26540194014704316 ]
PP1: [|||| ] [ 0.21657860877712054 ]
PP2: [|||| ] [ 0.21657860877712054 ]
PP3: [||| ] [ 0.17661198683565493 ]
PP4: [|| ] [ 0.12482885546306076 ]
print_coloc_result('colocalized', *coloc([1, 4, 9], [1, 4, 9]))
colocalized
PP0: [ ] [ 0.0015168270421050444 ]
PP1: [ ] [ 0.001237791593959775 ]
PP2: [ ] [ 0.001237791593959775 ]
PP3: [ ] [ 1.4094001056824932e-05 ]
PP4: [||||||||||||||||||| ] [ 0.9959934957689188 ]
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