Colonyzer2

Image analysis for microbial cultures growing on solid agar surfaces

These details have not been verified by PyPI

Project links

Homepage

Project description

Image analysis software for estimating cell density in arrayed microbial cultures growing on solid agar. This module contains a set of functions for spot location, image segmentation and spot size estimation, suitable for quantifying culture size/cell density for libraries of microbial cultures growing on a solid agar surface.

Detailed documentation can be found at the websites below:

Website describing current, stable release.

GitHub pages descring latest, development version.

Open access manuscript describing Colonyzer algorithms.

Open access video and manuscript demonstrating the use of Colonyzer within a Quantitative Fitness Analysis workflow.

Contributors

Conor Lawless

Darren Wilkinson

Project details

These details have not been verified by PyPI

Project links

Homepage

Release history Release notifications | RSS feed

This version

1.1.22

Aug 14, 2017

1.1.20

Feb 9, 2017

1.1.19

Jan 30, 2017

1.1.18

Nov 1, 2016

1.1.17

Nov 1, 2016

1.1.16

Nov 1, 2016

1.1.15

Nov 1, 2016

1.1.13

Jul 15, 2016

1.1.11

Jan 11, 2016

1.1.9

Dec 8, 2015

1.1.8

Nov 17, 2015

1.1.7

Nov 17, 2015

1.1.6

Nov 17, 2015

1.1.5

Nov 16, 2015

1.1.4

Nov 12, 2015

1.1.3

Oct 23, 2015

1.1.2

Oct 23, 2015

1.1.1

Sep 27, 2015

1.1.0

Sep 25, 2015

1.0.88

Aug 19, 2015

1.0.87

Aug 18, 2015

1.0.86

Nov 25, 2014

1.0.85

Nov 23, 2014

1.0.84

Nov 18, 2014

1.0.83

Oct 22, 2014

1.0.82

Oct 22, 2014

1.0.81

Sep 22, 2014

1.0.80

Jul 18, 2014

1.0.79

Jun 24, 2014

1.0.78

Apr 29, 2014

1.0.77

Mar 25, 2014

1.0.76

Mar 5, 2014

1.0.75

Mar 5, 2014

1.0.74

Jan 27, 2014

1.0.73

Jan 27, 2014

1.0.72

Jan 23, 2014

1.0.71

Jan 23, 2014

1.0.70

Jan 23, 2014

1.0.69

Jan 21, 2014

1.0.68

Jan 19, 2014

1.0.67

Jan 19, 2014

1.0.66

Jan 8, 2014

1.0.65

Nov 27, 2013

1.0.64

Nov 26, 2013

1.0.63

Oct 31, 2013

1.0.61

Jul 17, 2013

1.0.60

Jul 4, 2013

1.0.59

Jun 6, 2013

1.0.58

Jun 3, 2013

1.0.57

Jun 3, 2013

1.0.56

May 29, 2013

1.0.55

May 29, 2013

1.0.54

May 17, 2013

1.0.53

May 2, 2013

1.0.52

Apr 15, 2013

1.0.51

Apr 15, 2013

1.0.50

Apr 15, 2013

1.0.45

Apr 11, 2013

1.0.44

Apr 11, 2013

1.0.43

Apr 9, 2013

1.0.42

Apr 9, 2013

1.0.41

Apr 9, 2013

1.0.4

Apr 9, 2013

1.0.3

Apr 9, 2013

1.0.2

Mar 14, 2013

1.0.1

Feb 5, 2013

1.0

Feb 5, 2013

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