A package that wraps PyHGNC to perform mappings between different gene identifiers
This package support the mapping across different protein/gene identifiers.
Gray KA, Yates B, Seal RL, Wright MW, Bruford EA. genenames.org: the HGNC resources in 2015. Nucleic Acids Res. 2015 Jan;43(Database issue):D1079-85. doi: 10.1093/nar/gku1071. http://www.ncbi.nlm.nih.gov/pubmed/25361968
compath_hgnc can be installed easily from PyPI with the following code in your favorite terminal:
$ python3 -m pip install compath_hgnc
or from the latest code on GitHub with:
$ python3 -m pip install git+https://github.com/compath/compath_hgnc.git@master
HGNC can be downloaded and populated from either the Python REPL or the automatically installed command line utility.
>>> import compath_hgnc >>> compath_hgnc_manager = compath_hgnc.Manager() >>> compath_hgnc_manager.populate()
Command Line Utility