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A Python library for creating comutation plots to visualize genomic information

Project description

CoMut

CoMut is a Python library for creating comutation plots to visualize genomic information.

Installation

CoMut can be installed via pip:

pip install comut

Quickstart

There is a Quickstart notebook that can create comut plots quickly with only input data. Simply download the notebook, specify the path to your data, and run the cells to produce a basic comut.

Documentation

There is also a Documentation notebook that documentation for CoMut. It describes the fundamentals of creating comuts, and provides the code used to generate the comut above.

Dependencies

CoMut runs on python 3.7 or later. CoMut requires the following packages as dependencies (they will be installed along with CoMut if using pip)

numpy>=1.18.1
pandas>=0.25.3
palettable>=3.3.0
matplotlib>=3.3.1

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