Python Interface for Residue-Residue Contact Predictions
Project description
A Python Interface to contact predictions
This project is a result of the continuous struggle using residue-residue contact prediction pipelines, visualisation tools and related software. The aim was to reduce this complexity and provide one unified interface as a basic platform. The resulting platform is the Contact Prediction ToolKit, or ConKit in short.
Key Features
Parsers for Multiple Sequence Alignment and contact prediction files
Easy-to-use wrappers for the most-commonly used software, e.g. HHblits, Jackhmmer, CCMpred, PSICOV, …
Many convenience functions for prediction-structure matching, determination of True Positive contacts, calculation of MSA and contact prediction statistics, etc.
Contributing
There are two ways by which you can contribute to ConKit:
Submit any suggestions to the GitHub Issue Tracker, or
Fork this repository, commit your changes and submit a pull request.
Found a Bug?
Please use the GitHub Issue Tracker.