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Common repository for connectomics-related libraries.

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Connectomics

About this repository

Common code for analyzing volumetric datasets for connectomic reconstruction, including geometric primitives like BoundingBox and BoxGenerator, and dealing with segmentation ID ranges, including relabling, making ranges contiguous, and testing whether two volumes contrain equivalent sequences.

Projects using Connectomics

  1. SOFIMA - SOFIMA (Scalable Optical Flow-based Image Montaging and Alignment) is a tool for stitching, aligning and warping large 2d, 3d and 4d microscopy datasets.

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