A python-based command line utility to automate some of the most common data tasks faced by the Clinical Coordinators.
Project description
======================
Coordinator Data Tasks
======================
.. image:: https://img.shields.io/pypi/v/coordinator_data_tasks.svg
:target: https://pypi.python.org/pypi/coordinator_data_tasks
.. image:: https://img.shields.io/travis/ScottSnapperLab/coordinator_data_tasks.svg
:target: https://travis-ci.org/ScottSnapperLab/coordinator_data_tasks
.. image:: https://readthedocs.org/projects/coordinator-data-tasks/badge/?version=latest
:target: https://coordinator-data-tasks.readthedocs.io/en/latest/?badge=latest
:alt: Documentation Status
.. image:: https://pyup.io/repos/github/ScottSnapperLab/coordinator_data_tasks/shield.svg
:target: https://pyup.io/repos/github/ScottSnapperLab/coordinator_data_tasks/
:alt: Updates
A python-based command line utility to automate some of the most common data tasks faced by the Clinical Coordinators.
* Free software: MIT license
* Documentation: https://coordinator-data-tasks.readthedocs.io.
Features
--------
* left joins on multiple columns
* smart loading of \*.xls, \*.xlsx, \*.csv, \*.csv.gz files
Credits
---------
This package was created with Cookiecutter_ and the `xguse/cookiecutter-pypackage`_ project template which is based on `audreyr/cookiecutter-pypackage`_.
.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage
.. _`xguse/cookiecutter-pypackage`: https://github.com/xguse/cookiecutter-pypackage
=======
History
=======
v0.0.5 / 2017-10-25
===================
* updated docs
* Makefile: pull-req-check aliased to test-all
* flake8
* make test-all now tests docs build
v0.0.4 / 2017-10-25
===================
* travis tests now passing
* changed pypi deploy target to 3.7
* utils/loaders.py: added file (smart table loaders)
* track some xls files for tests
v0.0.3 / 2017-10-24
===================
* Makefile: experimenting with install structure
* test_coordinator_data_tasks.py: removed useless test
* cli.py: added join subcommands
* requirements.dev.pip.txt: mypy lives here now
* docs/index.rst: fixed too few `==` under title
* docs/conf.py: upgraded auto-build code
* left_join.py: more log entries
* moved recommonmark req to requirements.pip.txt
* got tox to work
* Makefile: experimenting with install structure
* MANIFEST.in: add req files to allow tox to work
* flake8
* removed setup and test specific req files
* README.rst: fixed badge address errors
* fix repo in travis ci setup
v0.0.2 / 2017-10-23
===================
* prelim tests
* allow from coordinator_data_tasks import commands
* travis ci setup
v0.0.1 / 2017-10-23
===================
* setup.py: update metadata (language support)
* configure tox
* Makefile: formatting
* Makefile: py.test -> pytest
* setup.py: pick up reqs from req.txt files
* setup.cfg: ignore some errors
* Makefile: upgraded help, supported conda install
* requirements.dev.txt: unpin for now
* added commands pkg
* added utils pkg
* added extra requirements subfiles (pip,setup,etc)
* ignore binary document extentions
* ignore vscode and mypy_cache
Coordinator Data Tasks
======================
.. image:: https://img.shields.io/pypi/v/coordinator_data_tasks.svg
:target: https://pypi.python.org/pypi/coordinator_data_tasks
.. image:: https://img.shields.io/travis/ScottSnapperLab/coordinator_data_tasks.svg
:target: https://travis-ci.org/ScottSnapperLab/coordinator_data_tasks
.. image:: https://readthedocs.org/projects/coordinator-data-tasks/badge/?version=latest
:target: https://coordinator-data-tasks.readthedocs.io/en/latest/?badge=latest
:alt: Documentation Status
.. image:: https://pyup.io/repos/github/ScottSnapperLab/coordinator_data_tasks/shield.svg
:target: https://pyup.io/repos/github/ScottSnapperLab/coordinator_data_tasks/
:alt: Updates
A python-based command line utility to automate some of the most common data tasks faced by the Clinical Coordinators.
* Free software: MIT license
* Documentation: https://coordinator-data-tasks.readthedocs.io.
Features
--------
* left joins on multiple columns
* smart loading of \*.xls, \*.xlsx, \*.csv, \*.csv.gz files
Credits
---------
This package was created with Cookiecutter_ and the `xguse/cookiecutter-pypackage`_ project template which is based on `audreyr/cookiecutter-pypackage`_.
.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage
.. _`xguse/cookiecutter-pypackage`: https://github.com/xguse/cookiecutter-pypackage
=======
History
=======
v0.0.5 / 2017-10-25
===================
* updated docs
* Makefile: pull-req-check aliased to test-all
* flake8
* make test-all now tests docs build
v0.0.4 / 2017-10-25
===================
* travis tests now passing
* changed pypi deploy target to 3.7
* utils/loaders.py: added file (smart table loaders)
* track some xls files for tests
v0.0.3 / 2017-10-24
===================
* Makefile: experimenting with install structure
* test_coordinator_data_tasks.py: removed useless test
* cli.py: added join subcommands
* requirements.dev.pip.txt: mypy lives here now
* docs/index.rst: fixed too few `==` under title
* docs/conf.py: upgraded auto-build code
* left_join.py: more log entries
* moved recommonmark req to requirements.pip.txt
* got tox to work
* Makefile: experimenting with install structure
* MANIFEST.in: add req files to allow tox to work
* flake8
* removed setup and test specific req files
* README.rst: fixed badge address errors
* fix repo in travis ci setup
v0.0.2 / 2017-10-23
===================
* prelim tests
* allow from coordinator_data_tasks import commands
* travis ci setup
v0.0.1 / 2017-10-23
===================
* setup.py: update metadata (language support)
* configure tox
* Makefile: formatting
* Makefile: py.test -> pytest
* setup.py: pick up reqs from req.txt files
* setup.cfg: ignore some errors
* Makefile: upgraded help, supported conda install
* requirements.dev.txt: unpin for now
* added commands pkg
* added utils pkg
* added extra requirements subfiles (pip,setup,etc)
* ignore binary document extentions
* ignore vscode and mypy_cache
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