Jax coreset algorithms.
Project description
Coreax
© Crown Copyright GCHQ
Coreax is a library for coreset algorithms, written in JAX for fast execution and GPU support.
About Coresets
For $n$ points in $d$ dimensions, a coreset algorithm takes an $n \times d$ data set and reduces it to $m \ll n$ points whilst attempting to preserve the statistical properties of the full data set. The algorithm maintains the dimension of the original data set. Thus the $m$ points, referred to as the coreset, are also $d$-dimensional.
The $m$ points need not be in the original data set. We refer to the special case where all selected points are in the original data set as a coresubset.
Some algorithms return the $m$ points with weights, so that importance can be attributed to each point in the coreset. The weights, $w_i$ for $i=1,...,m$, are often chosen from the simplex. In this case, they are non-negative and sum to 1: $w_i >0$ $\forall i$ and $\sum_{i} w_i =1$.
Please see the documentation for some in-depth examples.
Example applications
Choosing pixels from an image
In the example below, we reduce the original 180x215
pixel image (38,700 pixels in total) to a coreset approximately 20% of this size.
(Left) original image.
(Centre) 8,000 coreset points chosen using Stein kernel herding, with point size a
function of weight.
(Right) 8,000 points chosen randomly.
Run examples/david_map_reduce_weighted.py
to replicate.
Video event detection
Here we identify representative frames such that most of the
useful information in a video is preserved.
Run examples/pounce.py
to replicate.
Original | Coreset |
---|---|
Setup
Install Coreax from PyPI by adding coreax
to your project dependencies or running
pip install coreax
Coreax uses JAX. It installs the CPU version by default, but if you have a GPU or TPU,
see the
JAX installation instructions
for options available to take advantage of the power of your system. For example, if you
have an NVIDIA GPU on Linux, add jax[cuda12]
to your project dependencies or run
pip install jax[cuda12]
There are optional sets of additional dependencies:
coreax[test]
is required to run the tests and examples;coreax[doc]
is for compiling the Sphinx documentation;coreax[dev]
includes all tools and packages a developer of Coreax might need.
Note that the test
and dev
dependencies include opencv-python-headless
, which is
the headless version of OpenCV and is incompatible with other versions of OpenCV. If you
wish to use an alternative version, remove opencv-python-headless
and select an
alternative from the
OpenCV documentation.
Should the installation of Coreax fail, you can see the versions used by the Coreax
development team in uv.lock
. You can transfer these to your own project as follows.
First, install UV. Then,
clone the repo from GitHub. Next, run
uv export --format requirements-txt
which will generate a requirements.txt
. Install this in your own project before trying
to install Coreax itself,
pip install -r requirements.txt
pip install coreax
Release cycle
We anticipate two release types: feature releases and security releases. Security releases will be issued as needed in accordance with the security policy. Feature releases will be issued as appropriate, dependent on the feature pipeline and development priorities.
Coming soon
Some features coming soon include:
- Coordinate bootstrapping for high-dimensional data.
- Other coreset-style algorithms, including recombination, as means to reducing a large dataset whilst maintaining properties of the underlying distribution.
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