Connectomics Registration General Inference Engine
Project description
COnnectomics Registration Generalizable Inference Engine (corgie)
Welcome to corgie! corgie is a command line tool built for registration of very large 3D volumes.
Installation
pip install corgie
Example
corgie copy \
--src_layer_spec '{
"name": "unaligned",
"path": "https://s3-hpcrc.rc.princeton.edu/minnie65-phase3-em/unaligned"
}' \
--src_layer_spec '{
"name": "large_folds",
"type": "mask",
"path": "gs://seunglab_minnie_phase3/alignment/unaligned_fold_lengths/threshold_350"
}' \
--dst_folder "gs://corgie/demo/my_first_stack" \
--start_coord "150000, 150000, 17000" \
--end_coord "250000, 250000, 17020" \
--mip 6 \
--chunk_xy 1024 --chunk_z 1
Documentation
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
corgie-0.1.1.tar.gz
(71.3 kB
view details)
Built Distribution
corgie-0.1.1-py3-none-any.whl
(106.3 kB
view details)
File details
Details for the file corgie-0.1.1.tar.gz
.
File metadata
- Download URL: corgie-0.1.1.tar.gz
- Upload date:
- Size: 71.3 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.0 CPython/3.9.13
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | 85e672c99908be72c6eed18194a436aebbeecbf2589927cd9e5b896a2714c8b4 |
|
MD5 | aae3963d0588d527fa70229bcb89100f |
|
BLAKE2b-256 | 0ec60290906961a65d219e9eb20a92ef80973725252d80aefded80814fa313c9 |
File details
Details for the file corgie-0.1.1-py3-none-any.whl
.
File metadata
- Download URL: corgie-0.1.1-py3-none-any.whl
- Upload date:
- Size: 106.3 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.0 CPython/3.9.13
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | 16eaaaf68379da753c0bdf86123a9d22fea053c90b68f3506501fe672f118ad9 |
|
MD5 | 5f7fd8f71cd73d8dd75022dc0f0d250b |
|
BLAKE2b-256 | b693a0a928cec50ccfbcbaee05c1af02fbfaf5a5ee40479c4b3611817b9894f7 |