Skip to main content

The python sister project to CortexJDK

Project description

https://travis-ci.org/winni2k/cortexpy.svg?branch=master https://coveralls.io/repos/github/winni2k/cortexpy/badge.svg?branch=admin_category https://landscape.io/github/winni2k/cortexpy/master/landscape.svg?style=flat

Supporting Python versions 3.5 and 3.6.

Cortexpy is a Python package for sequence analysis using linked and colored de Bruijn graphs such as the ones created by Mccortex. This project aims to mirror many of the features contained in CortexJDK.

Install

Install the latest version of cortexpy:

pip install cortexpy

Bugs

Please raise a github issue for any bugs.

Development

Set up the project:

make init

See cortexpy/__main__.py for example uses of cortexpy.

Publishing to Pypi

# assuming version 0.0.1

# Step 1: Set __version__ in cortexpy/__init__.py

# Step 2: Make version commit
git commit -am'Bump to version 0.0.1'

# Step 3: tag commit
git tag 0.0.1

# Step 4: publish to pypi
make deploy

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

cortexpy-0.26.1.tar.gz (72.1 kB view hashes)

Uploaded Source

Built Distribution

cortexpy-0.26.1-py3-none-any.whl (101.3 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page