cortexpy 0.28.1

The python sister project to CortexJDK

Cortexpy is a Python package for sequence analysis using linked and colored de Bruijn graphs such as the ones created by Mccortex. This project aims to mirror many of the features contained in CortexJDK.

Install

Install the latest version of cortexpy:

pip install cortexpy

Bugs

Please raise a github issue for any bugs.

Development

Set up the project:

make init

See cortexpy/__main__.py for example uses of cortexpy.

Publishing to Pypi

# assuming version 0.0.1

# Step 1: Set __version__ in cortexpy/__init__.py

# Step 2: Make version commit
git commit -am'Bump to version 0.0.1'

# Step 3: tag commit
git tag 0.0.1

# Step 4: publish to pypi
make deploy