The python sister project to CortexJDK
Project description
docs |
|
|---|---|
tests |
   |
package |
     |
Cortexpy is a Python package for sequence analysis using linked and colored De Bruijn graphs such as the ones created by Mccortex. This project aims to mirror many of the features contained in CortexJDK.
Free software: Apache Software License 2.0
Installation
pip install cortexpy
Development
Set up the project:
make init
To run the all tests run:
tox
Note, to combine the coverage data from all the tox environments run:
Windows |
set PYTEST_ADDOPTS=--cov-append tox |
|---|---|
Other |
PYTEST_ADDOPTS=--cov-append tox |
Bugs
Please raise a github issue for any bugs.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
cortexpy-0.32.0.tar.gz
(192.0 kB
view details)
File details
Details for the file cortexpy-0.32.0.tar.gz.
File metadata
- Download URL: cortexpy-0.32.0.tar.gz
- Upload date:
- Size: 192.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.24.0 CPython/3.6.6
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
289f2c1c1e5474819e8ea030442b894c8910306e12fd7cc80fc2723508b3b83e
|
|
| MD5 |
76492dae0aefd18ee93d969b15e4adad
|
|
| BLAKE2b-256 |
6eced974c000683d3860014068356783761cf1281d4b6fb5d07512af5c1b89e3
|
