cortexpy 0.33.0

The python sister project to CortexJDK

docs
tests
package

Cortexpy is a Python package for sequence analysis using linked and colored De Bruijn graphs such as the ones created by Mccortex. This project aims to mirror many of the features contained in CortexJDK.

• Free software: Apache Software License 2.0

Installation

pip install cortexpy

Development

Set up the project:

make init

To run the all tests run:

tox

Note, to combine the coverage data from all the tox environments run:

Windows	set PYTEST_ADDOPTS=--cov-append tox
Other	PYTEST_ADDOPTS=--cov-append tox

Bugs

Please raise a github issue for any bugs.