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Workflow Management System

Project description

COSMOS is a Python library for workflow management that allows formal description of pipelines and partitioning of jobs. In addition, it includes a user-interface for tracking the progress of jobs, abstraction of the queuing system and fine-grained control over the workflow. Workflows can be created on traditional computing clusters as well as cloud-based services. It is developed jointly by the Laboratory for Personalized Medicine at Harvard Medical School, the Wall Lab at Stanford University, and Invitae.

For more information and the full documentation please visit http://cosmos-wfm.readthedocs.org.

COSMOS was officially published as a manuscript, but has evolved a lot since it’s original inception. If you use COSMOS for research, please cite it’s manuscript. This means a lot to the author.

COSMOS is currently BETA. Although the code is considered stable, we are planning a major publication before the official release.

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