Skip to main content

No project description provided

Project description

Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public. build Ruff Code style: black

covvfit

Fitness estimates of SARS-CoV-2 variants.

Installation

Developers

Create a new environment, e.g., using Micromamba:

$ micromamba create -n covvfit -c conda-forge python=3.11

Then, install the package.

For a machine where development happens it comes with developer utilities:

$ pip install poetry
$ poetry install --with dev
$ pre-commit install

See Also

  • V-pipe: a bioinformatics pipeline for viral sequencing data.
  • cojac: command-line tools for the analysis of co-occurrence of mutations on amplicons.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

covvfit-0.1.0.tar.gz (18.7 kB view details)

Uploaded Source

Built Distribution

covvfit-0.1.0-py3-none-any.whl (21.1 kB view details)

Uploaded Python 3

File details

Details for the file covvfit-0.1.0.tar.gz.

File metadata

  • Download URL: covvfit-0.1.0.tar.gz
  • Upload date:
  • Size: 18.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.5.1 CPython/3.10.6 Linux/6.8.0-48-generic

File hashes

Hashes for covvfit-0.1.0.tar.gz
Algorithm Hash digest
SHA256 a773e47eb85f86da750529c958854bab37d025e2a430be4e63ce44e8d9c16e66
MD5 83f10fd70c2d98b193cab3268074faeb
BLAKE2b-256 845ea424d641a43a435326093070de4005577336118a033f18e01af8534b2121

See more details on using hashes here.

File details

Details for the file covvfit-0.1.0-py3-none-any.whl.

File metadata

  • Download URL: covvfit-0.1.0-py3-none-any.whl
  • Upload date:
  • Size: 21.1 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.5.1 CPython/3.10.6 Linux/6.8.0-48-generic

File hashes

Hashes for covvfit-0.1.0-py3-none-any.whl
Algorithm Hash digest
SHA256 a9252e94503a36407ca0669aa25e450d8338cf83af813890f8c998ef6e2e18b4
MD5 8fceeb731a46e85ba677173934011793
BLAKE2b-256 0ab271893817a5a268efd9f3f4549db8c30aab9cacd4e38df012c2dfa58e97a9

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page