Simple tool to compare cpp quant results

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Project description

How to Install

pip install cppquant

How to Run (Example)

cppcompare --census_files BeLW_A1_wt_1_1_S5_A1_1_3756_nopd_2020_11_24_15_256323_2024_02_28_09_33974_census-out_doublek.txt:wt BeLW_A1_wt_1_2_S5_B7_1_3781_nopd_2020_11_24_15_256309_2024_02_28_09_33960_census-out_doublek.txt:wt BeLW_A2_wt_2_1_S5_A2_1_3757_nopd_2020_11_24_15_256334_2024_02_28_09_33985_census-out_doublek.txt:wt BeLW_A2_wt_2_2_S5_B8_1_3782_nopd_2020_11_24_15_256308_2024_02_28_09_33959_census-out_doublek.txt:wt BeLW_A3_wt_3_1_S5_A3_1_3758_nopd_2020_11_24_15_256314_2024_02_28_09_33965_census-out_doublek.txt:wt BeLW_A3_wt_3_2_S5_B9_1_3783_nopd_2020_11_24_15_256320_2024_02_28_09_33971_census-out_doublek.txt:wt BeLW_B1_A25T_1_1rep_S2_A1_1_3858_nopd_2020_11_24_15_256333_2024_02_28_09_33984_census-out_doublek.txt:A25T BeLW_B1_A25T_1_1_S5_A4_1_3760_nopd_2020_11_24_15_256313_2024_02_28_09_33964_census-out_doublek.txt:A25T BeLW_B1_A25T_1_2_S5_B10_1_3785_nopd_2020_11_24_15_256318_2024_02_28_09_33969_census-out_doublek.txt:A25T BeLW_B2_A25T_2_1rep_S2_A2_1_3859_nopd_2020_11_24_15_256317_2024_02_28_09_33968_census-out_doublek.txt:A25T BeLW_B2_A25T_2_1_S5_A5_1_3761_nopd_2020_11_24_15_256322_2024_02_28_09_33973_census-out_doublek.txt:A25T BeLW_B2_A25T_2_2_S5_B11_1_3786_nopd_2020_11_24_15_256330_2024_02_28_09_33981_census-out_doublek.txt:A25T BeLW_B3_A25T_3_1rep_S2_A3_1_3860_nopd_2020_11_24_15_256316_2024_02_28_09_33967_census-out_doublek.txt:A25T BeLW_B3_A25T_3_1_S5_A6_1_3762_nopd_2020_11_24_15_256302_2024_02_28_09_33953_census-out_doublek.txt:A25T BeLW_B3_A25T_3_2_S5_B12_1_3787_nopd_2020_11_24_15_256300_2024_02_28_09_33951_census-out_doublek.txt:A25T BeLW_C1_A25T_TAF_S_1_1_S5_A7_1_3764_nopd_2020_11_24_15_256312_2024_02_28_09_33963_census-out_doublek.txt:A25T_TAF_S BeLW_C1_A25T_TAF_S_1_2_S5_C1_1_3789_nopd_2020_11_24_15_256295_2024_02_28_09_33946_census-out_doublek.txt:A25T_TAF_S BeLW_C2_A25T_TAF_S_2_1_S5_A8_1_3765_nopd_2020_11_24_15_256319_2024_02_28_09_33970_census-out_doublek.txt:A25T_TAF_S BeLW_C2_A25T_TAF_S_2_2_S5_C2_1_3790_nopd_2020_11_24_15_256307_2024_02_28_09_33958_census-out_doublek.txt:A25T_TAF_S BeLW_C3_A25T_TAF_S_3_1_S5_A9_1_3766_nopd_2020_11_24_15_256329_2024_02_28_09_33980_census-out_doublek.txt:A25T_TAF_S BeLW_C3_A25T_TAF_S_3_2_S5_C3_1_3791_nopd_2020_11_24_15_256315_2024_02_28_09_33966_census-out_doublek.txt:A25T_TAF_S BeLW_D1_A25T_TAF_1_1_S5_A10_1_3768_nopd_2020_11_24_15_256311_2024_02_28_09_33962_census-out_doublek.txt:A25T_TAF BeLW_D1_A25T_TAF_1_2_S5_C4_1_3793_nopd_2020_11_24_15_256306_2024_02_28_09_33957_census-out_doublek.txt:A25T_TAF BeLW_D2_A25T_TAF_2_1_S5_A11_1_3769_nopd_2020_11_24_15_256325_2024_02_28_09_33976_census-out_doublek.txt:A25T_TAF BeLW_D2_A25T_TAF_2_2_S5_C5_1_3794_nopd_2020_11_24_15_256301_2024_02_28_09_33952_census-out_doublek.txt:A25T_TAF BeLW_D3_A25T_TAF_3_1_S5_A12_1_3770_nopd_2020_11_24_15_256299_2024_02_28_09_33950_census-out_doublek.txt:A25T_TAF BeLW_D3_A25T_TAF_3_2_S5_C6_1_3795_nopd_2020_11_24_15_256303_2024_02_28_09_33954_census-out_doublek.txt:A25T_TAF BeLW_E1_A25T_TAF_AS_1_1rep_S2_A7_1_3862_nopd_2020_11_24_15_256321_2024_02_28_09_33972_census-out_doublek.txt:A25T_TAF_AS BeLW_E1_A25T_TAF_AS_1_2_S5_C7_1_3797_nopd_2020_11_24_15_256298_2024_02_28_09_33949_census-out_doublek.txt:A25T_TAF_AS BeLW_E2_A25T_TAF_AS_2_1rep_S2_A8_1_3863_nopd_2020_11_24_15_256324_2024_02_28_09_33975_census-out_doublek.txt:A25T_TAF_AS BeLW_E2_A25T_TAF_AS_2_2_S5_C8_1_3798_nopd_2020_11_24_15_256332_2024_02_28_09_33983_census-out_doublek.txt:A25T_TAF_AS BeLW_E3_A25T_TAF_AS_3_1rep_S2_A9_1_3864_nopd_2020_11_24_15_256296_2024_02_28_09_33947_census-out_doublek.txt:A25T_TAF_AS BeLW_E3_A25T_TAF_AS_3_1_S5_B3_1_3775_nopd_2020_11_24_15_256305_2024_02_28_09_33956_census-out_doublek.txt:A25T_TAF_AS BeLW_E3_A25T_TAF_AS_3_2_S5_C9_1_3799_nopd_2020_11_24_15_256310_2024_02_28_09_33961_census-out_doublek.txt:A25T_TAF_AS BeLW_F1_A25T_TAF_S_Tpg_1_1_S5_B4_1_3777_nopd_2020_11_24_15_256297_2024_02_28_09_33948_census-out_doublek.txt:A25T_TAF_S_Tpg BeLW_F1_A25T_TAF_S_Tpg_1_2_S5_C10_1_3801_nopd_2020_11_24_15_256331_2024_02_28_09_33982_census-out_doublek.txt:A25T_TAF_S_Tpg BeLW_F2_A25T_TAF_S_Tpg_2_1_S5_B5_1_3778_nopd_2020_11_24_15_256326_2024_02_28_09_33977_census-out_doublek.txt:A25T_TAF_S_Tpg BeLW_F2_A25T_TAF_S_Tpg_2_2_S5_C11_1_3802_nopd_2020_11_24_15_256327_2024_02_28_09_33978_census-out_doublek.txt:A25T_TAF_S_Tpg BeLW_F3_A25T_TAF_S_Tpg_3_1_S5_B6_1_3779_nopd_2020_11_24_15_256304_2024_02_28_09_33955_census-out_doublek.txt:A25T_TAF_S_Tpg BeLW_F3_A25T_TAF_S_Tpg_3_2_S5_C12_1_3803_nopd_2020_11_24_15_256328_2024_02_28_09_33979_census-out_doublek.txt:A25T_TAF_S_Tpg --output_folder C:\Users\Ty\PycharmProjects\CppSiteFinder2\output --fasta_file C:\data\combined_UniProt__UniProt_Human_Human__12-02-2020.fasta --input_folder C:\Users\Ty\PycharmProjects\CPPSiteFinder\downloads\CPP_on_secreted_proteins_TTR --site_regex K --pairs wt,A25T;wt,A25T_TAF_S;wt,A25T_TAF_AS;wt,A25T_TAF_S_Tpg

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0.0.2

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