cresset 0.1

Instantiate Python objects with Jsonnet

cresset

cresset makes it super simple to construct Pytorch modules directly from config files. You no longer have to rely on the use of the unsafe pickle module which can run arbitrary code. Rather, cresset builds on the power of confactory to enable loading the full model definition directly from JSON files.

Simple Example

Here's a simple example demonstrating how to create the same model from the Pytorch Quickstart Tutorial. First, write a quickstart.json file with the following structure.

{
  "type": "Sequential",
  "args": [
    { "type": "Linear", "in_features": 784, "out_features": 512 },
    { "type": "ReLU" },
    { "type": "Linear", "in_features": 512, "out_features": 512 },
    { "type": "ReLU" },
    { "type": "Linear", "in_features": 512, "out_features": 10 }
  ]
}

Now in Python you can build the Module directly from the config file:

from cresset.nn import Module

model = Module.from_config("quickstart.json")
print(model)

A More Complex Example

Large models have lots of layers and might even have conditional configuration options. Using JSON directly would be combersome for defining such models. Fortunately, cresset supports Jsonnet, making configuration a breeze. Below you can see a much more complicated example of creating a Transformer-like model from builtin Pytorch modules. First create a file named transformer-like.jsonnet with the following configuration:

# An attention-less Transformer-like model (only performs feedforward ops)
function (vocab_size, heads=8, dim=512, hidden_dim=2048, layers=6, dropout_p=0.1) {
  # Make a reference to this transformer so nested objects can reference the top-level helpers
  local transformer = self,

  # Define a number of hidden helpers that can be overridden by callers of this function
  "dropout":: function(module, name="module", fields=null) {
    local dropout = { "type": "Dropout", "p": dropout_p },
    "type": "Sequential",
    "args": {
      [name]: module,
      "dropout": (
        if fields == null then dropout else {
          "type": "Apply",
          "fields": fields,
          "module": dropout
        }
      )
    }
  },

  "residual":: function(name, module, field=null) {
    "type": "Sequential",
    "args": {
      "residual": {
        "type": "Parallel",
        "args": [
          if field == null then { "type": "Identity" }
          else { "type": "Select", "field": field },
          transformer.dropout(module, name=name)
        ]
      },
      "sum": { "type": "Reduce", "op": "SUM" },
      "norm": { "type": "LayerNorm", "normalized_shape": dim }
    }
  },

  "ffn":: {
    "type": "Sequential",
    "args": {
      "hidden": { "type": "Linear", "in_features": dim, "out_features": hidden_dim },
      "activation": { "type": "ReLU", "inplace": true },
      "output": { "type": "Linear", "in_features": hidden_dim, "out_features": dim }
    }
  },

  "type": "Sequential",
  "args": [{
    "type": "Embedding",
    "embedding_dim": dim,
    "num_embeddings": vocab_size,
  }] + std.repeat([transformer.residual("ffn", transformer.ffn)], layers),

}

The top-level Jsonnet function has one required parameter, vocab_size, which must be specified. This can be done using the bindings parameter of Module.from_config. See the example Python below:

from cresset.nn import Module

# vocab_size is required
Module.from_config("transformer-like.jsonnet", bindings={"vocab_size": 65535})

# can override default values, e.g. disable dropout for inference
Module.from_config("transformer-like.jsonnet", bindings={"vocab_size": 65535, "dropout_p": 0})

Additional Features

In addition to support for Pytorch's torch.nn.Module, cresset also wraps torch.optim.Optimizer and torch.optim.lr_scheduler.LRScheduler, allowing for defining training configurations. Furthermore, it creates wrappers for the initialization functions in torch.nn.init, such that they can be used to initialize your model. For example, the below code will run a set of initializers on your model parameters which match a regular expression.

import logging
import warnings
from typing import List, Set

import attr

from confactory import configurable
from cresset.nn import Sequential
from cresset.nn.init import Initializer, Zeros

class UninitializedParameters(Warning):
    """A warning indicating an uninitialized parameter"""

    def __init__(self, parameters: List[str]):
        super().__init__(", ".join(parameters))

@configurable
class ModelWithInitializers(Sequential):
    """A sequence model"""

    initializers: List[Initializer] = attr.ib(
        # The mypy attrs plugin has a bug, so we have to ignore the arg type
        # issue below, see https://github.com/python/mypy/issues/5313
        default=[Zeros(regex=r".*")],  # type: ignore[arg-type]
        validator=attr.validators.deep_iterable(
            attr.validators.instance_of(Initializer)
        ),
    )
    warn_uninitialized_params: bool = False
    log_initializers: bool = False

    def __attrs_post_init__(self):
        matched: Set[str] = set()
        all_params: Set[str] = set()
        for name, parameter in self.named_parameters():
            all_params.add(name)
            for initializer in self.initializers:
                if initializer.match(name):
                    if self.log_initializers:
                        logging.info(f"Running initializer {initializer} for {name}")
                    initializer(parameter)
                    matched.add(name)

        uninitialized = all_params - matched
        if self.warn_uninitialized_params and uninitialized:
            warnings.warn(UninitializedParameters(sorted(uninitialized)))

Now if we use the previously defined Transformer-like model as a base, we can create an initialized version. Name the new Jsonnet file transformer-like-initialized.json with the following contents:

# Imports
local transformer = import "transformer-like.jsonnet";

function(vocab_size, log=false, warn_uninitialized=false)
  transformer(vocab_size, layers=1) {
    "type": "ModelWithInitializers",
    "initializers": [
      {"type": "Zeros", "regex": "bias"},
      {"type": "Ones", "regex": "norm.weight"},
      {"type": "XavierUniform", "regex": "ffn.hidden.weight", "gain": "linear"},
      {"type": "XavierUniform", "regex": "ffn.output.weight", "gain": "relu"}
    ],
    "log_initializers": log,
    "warn_uninitialized_params": warn_uninitialized,
  };

Now we can load it similarly to the previous model, but this time the initializers will have been run:

from cresset.nn import Module

logging.basicConfig(level=logging.INFO)
Module.from_config("transformer-like-initialized.jsonnet", bindings={"vocab_size": 65535, log: True})

After running the above code, you should see output like this:

INFO:root:Running initializer Ones(regex=re.compile('norm.weight')) for 0.norm.weight
INFO:root:Running initializer Zeros(regex=re.compile('bias')) for 0.norm.bias
INFO:root:Running initializer XavierUniform(regex=re.compile('ffn.hidden.weight'), gain=1) for 0.residual.1.ffn.hidden.weight
INFO:root:Running initializer Zeros(regex=re.compile('bias')) for 0.residual.1.ffn.hidden.bias
INFO:root:Running initializer XavierUniform(regex=re.compile('ffn.output.weight'), gain=1.4142135623730951) for 0.residual.1.ffn.output.weight
INFO:root:Running initializer Zeros(regex=re.compile('bias')) for 0.residual.1.ffn.output.bias

License

This repository is licensed under the MIT license.

SPDX-License-Identifer: MIT