Collect and annotate Mycobacterium tuberculosis WGS data for CRISPR investigations.
Project description
CRISPRbuilder_TB
This README.md gives you the gist of the CRISPRbuilder_TB package. Please refer to crisprbuilder_tb.md included in the package for more detailed explanation.
Purpose of this package
Collect and annotate Mycobacterium tuberculosis whole genome sequencing data for CRISPR investigation.
Requirements
CRISPRbuilder_TB needs the following dependencies to work:
- python >= "3.6"
- xlrd >= "1.2.0"
- xmltodict >= "0.12.0"
- biopython >= "1.77"
These different versions are automatically downloaded when installing the CRISPRbuilder_TB package.
Installation
Install the package by writing in the command prompt:
pip3 install crisprbuilder_tb
.
How to use this package
The most often common instruction for this package is:
python -m crisprbuilder_tb --collect {SRA_reference}
.
See the attached criprbuilder-tb.md for a comprehensive explanation.
History
First version of this package, which is 1.0.0 was published on July 2020.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for crisprbuilder_tb-0.1.38-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 66a209e7ef0482f15075c159f424d409ca65bff031e5fa74c311e83aff0fe798 |
|
MD5 | 8c41cfb7e080b0b8d8e91d47568d3913 |
|
BLAKE2b-256 | 01d0b8bac450519c1fb64aa899f241beca033bc9df0888803d60bf6b0433f41e |