crisprbuilder-tb 0.1.40

Collect and annotate Mycobacterium tuberculosis WGS data for CRISPR investigations.

CRISPRbuilder_TB

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This README.md gives you the gist of the CRISPRbuilder_TB package. Please refer to crisprbuilder_tb.md included in the package for more detailed explanation.

Purpose of this package

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Collect and annotate Mycobacterium tuberculosis whole genome sequencing data for CRISPR investigation.

Requirements

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CRISPRbuilder_TB needs the following dependencies to work:

• python >= "3.6"
• xlrd >= "1.2.0"
• xmltodict >= "0.12.0"
• biopython >= "1.77"

These different versions are automatically downloaded when installing the CRISPRbuilder_TB package.

Installation

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Install the package by writing in the command prompt: pip3 install crisprbuilder_tb.

How to use this package

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The most often common instruction for this package is: python -m crisprbuilder_tb --collect {SRA_reference}.

See the attached criprbuilder-tb.md for a comprehensive explanation.

History

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First version of this package, which is 1.0.0 was published on July 2020.