CRNT4SBML is a cross-platform and easily installable Python based package. CRNT4SBML is concentrated on providing a simple workflow for the testing of core CRNT methods directed at detecting bistability in cell signaling pathways endowed with mass action kinetics.
Project description
CRNT4SBML
CRNT4SBML is a cross-platform and easily installable Python based package. CRNT4SBML is concentrated on providing a simple workflow for the testing of core CRNT methods directed at detecting bistability in cell signaling pathways endowed with mass action kinetics.
Free software: Apache Software License 2.0
Documentation: https://crnt4sbml.readthedocs.io.
Features
Routine for testing of the Deficiency Zero and One Theorems.
Routine for running the mass conservation approach.
Routine for running the semi-diffusive approach.
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.0.1 (08-22-2019)
First release on PyPI.
0.0.2 (08-23-2019)
Addition of Cytoscape functionality.
0.0.3 (08-26-2019)
Improvements to the plots produced by the continuity analysis.
0.0.4 (09-5-2019)
Addition of safety precautions for numerical continuation.
0.0.5 (09-16-2019)
Addition of routines to parse catalysis in SBML.
Addition of routines to automatically generate physiological bounds.
0.0.6 (09-23-2019)
Updating safety wrapper to smoothly work on Linux, Windows, and Mac.
Release history Release notifications | RSS feed
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