Crypt4GH Encryption Utility
crypt4gh is a Python tool to encrypt, decrypt or re-encrypt files, according to the GA4GH encryption file format.
Installation
Python 3.6+ required to use the crypt4gh encryption utility.
Install it from PyPI:
pip install crypt4gh
or compile and install it from the latest sources
Usage
The usual -h flag shows you the different options that the tool accepts.
$ crypt4gh -h
Utility for the cryptographic GA4GH standard, reading from stdin and outputting to stdout.
Usage:
{PROG} [-hv] [--log <file>] encrypt [--sk <path>] --recipient_pk <path> [--recipient_pk <path>]... [--range <start-end>] [--header <path>]
{PROG} [-hv] [--log <file>] decrypt [--sk <path>] [--sender_pk <path>] [--range <start-end>]
{PROG} [-hv] [--log <file>] rearrange [--sk <path>] --range <start-end>
{PROG} [-hv] [--log <file>] reencrypt [--sk <path>] --recipient_pk <path> [--recipient_pk <path>]... [--trim] [--header-only]
Options:
-h, --help Prints this help and exit
-v, --version Prints the version and exits
--log <file> Path to the logger file (in YML format)
--sk <keyfile> Curve25519-based Private key.
When encrypting, if neither the private key nor C4GH_SECRET_KEY are specified, we generate a new key
--recipient_pk <path> Recipient's Curve25519-based Public key
--sender_pk <path> Peer's Curve25519-based Public key to verify provenance (akin to signature)
--range <start-end> Byte-range either as <start-end> or just <start> (Start included, End excluded)
-t, --trim Keep only header packets that you can decrypt
--header <path> Where to write the header (default: stdout)
--header-only Whether the input data consists only of a header (default: false)
Environment variables:
C4GH_LOG If defined, it will be used as the default logger
C4GH_SECRET_KEY If defined, it will be used as the default secret key (ie --sk ${C4GH_SECRET_KEY})
Demonstration
Alice and Bob generate both a pair of public/private keys.
$ crypt4gh-keygen --sk alice.sec --pk alice.pub
$ crypt4gh-keygen --sk bob.sec --pk bob.pub
Bob encrypts a file for Alice:
$ crypt4gh encrypt --sk bob.sec --recipient_pk alice.pub < file > file.c4gh
Alice decrypts the encrypted file:
$ crypt4gh decrypt --sk alice.sec < file.c4gh
File Format
Refer to the specifications or this documentation.
Compilation from sources
Get the source code, and install the python dependencies with:
git clone --recursive https://github.com/EGA-archive/crypt4gh
pip install -r crypt4gh/requirements.txt
The Crypt4GH python package relies on libsodium, a portable C library. A copy is bundled with Crypt4GH as a submodule. You can either use the version of libsodium already installed on your system (eg, provided by your distribution), or use the bundled version.
For the system-wide version, you use the SODIUM_INSTALL=system environment variable. You might also need to adjust the CFLAGS and LDFLAGS environment variables. For example, using pkg-config to find the libsodium headers and library, you can use:
export SODIUM_INSTALL=system
# If not installed in default locations
export CFLAGS="$(pkg-config --cflags libsodium)"
export LDFLAGS="$(pkg-config --libs libsodium)"
If you want to use the bundled version, skip those environment variables.
Finally, run
pip install ./crypt4gh
Shell completions
If you want auto-completions, you can install extra scripts with the utility crypt4gh-completions.
For example, you can install the bash completion scripts with:
crypt4gh-completions install bash
This will install in ~/.local/share/bash-completion/completions (ie, the default location for 'bash-completion >= 2.x').
Or specify the target directory, eg
crypt4gh-completions install bash --target /etc/bash_completion.d
So far, we provide the bash and zsh completions. Help me out with a PR for the other shells.
List default locations and scripts with:
crypt4gh-completions show
1 maintainer
Release files for crypt4gh 1.8.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| crypt4gh-1.8.6.tar.gz | 944.0 kB | Details |
Built distributions (wheels)
Total release size: 8.9 MB
Release files / crypt4gh-1.8.6.tar.gz
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| Tags | Source |
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