cs2star 0.3.2

A simple utility to convert cryosparc particle positions to relion star format.

cs2star.py

A simple utility that wraps around csparc2star.py to convert particle positions from Cryosparc JOB directories into a RELION-ready directory. On top of what csparc2star.py already does, this script automatically symlinks (or copies) the .mrc files, renaming them as appropriate to mrcs and updating the rlnMicrographName column to reflect the change.

Installation

This package requires pyem, which is not available on pip under that name. To install it manually:

git clone https://github.com/asarnow/pyem.git
cd pyem
pip install -e .

Usage

cs2star cryosparc_job_dir [dest_dir]

A couple more options are available, check out the help page with -h.