A simple utility to convert cryosparc particle positions to relion star format.
Project description
cs2star.py
A simple utility that wraps around csparc2star.py
to convert particle positions from Cryosparc JOB directories into a RELION-ready directory. On top of what csparc2star.py
already does, this script automatically symlinks (or copies) the .mrc
files, renaming them as appropriate to mrcs
and updating the rlnMicrographName
column to reflect the change.
Installation
This package requires pyem, which is not available on pip under that name. To install it manually:
git clone https://github.com/asarnow/pyem.git
cd pyem
pip install -e .
Usage
cs2star cryosparc_job_dir [dest_dir]
A couple more options are available, check out the help page with -h
.
Project details
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cs2star-0.3.5.tar.gz
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