A simple utility to convert cryosparc particle positions to relion star format.
A simple utility that wraps around
csparc2star.py to convert particle positions from Cryosparc JOB directories into a RELION-ready directory. On top of what
csparc2star.py already does, this script automatically symlinks (or copies) the
.mrc files, renaming them as appropriate to
mrcs and updating the
rlnMicrographName column to reflect the change.
This package requires pyem, which is not available on pip under that name. To install it manually:
git clone https://github.com/asarnow/pyem.git cd pyem pip install -e .
cs2star cryosparc_job_dir [dest_dir]
A couple more options are available, check out the help page with
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