Convert cstag format from short to long, vice versa
Project description
cstag
cstag is a Python module to convert a minimap2's CS tag from short to long format, vice versa.
Installation
From PyPI:
pip install cstag
Example
# Convert short format of cs tag into long format
import cstag
cs = "cs:Z::4*ag:3"
cigar = "8M"
seq = "ACGTACGT"
cstag.lengthen(cs, cigar, seq)
# cs:Z:=ACGT*ag=CGT
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