cstag 0.0.3

Convert cstag format from short to long, vice versa

cstag

cstag is a Python module to convert a minimap2's CS tag from short to long format, vice versa.

Installation

From PyPI:

pip install cstag

Example

# Convert short format of cs tag into long format
import cstag
cs = "cs:Z::4*ag:3"
cigar = "8M"
seq = "ACGTACGT"
cstag.lengthen(cs, cigar, seq)
# cs:Z:=ACGT*ag=CGT

Documentation

https://akikuno.github.io/cstag/cstag/cstag.html