Python interface to access data from The Comparative Toxicogenomics Database (CTD)
Project description
CTD Python
Pyhton interface to access data from The Comparative Toxicogenomics Database (CTD)
install
pip3 install ctd-python
import the package in order to pull the data
from ctd import get_data
The package offers the following resources as DataFrames
- GeneInteractionTypes
- ChemicalPathwaysEnriched
- GeneDisease
- GenePathways
- DiseasePathways
- ChemocalPhenoTypeInteractions
- Chemicals
- Genes
- ChemicalGeneInteractions
- Chemicals
- Diseases
Get the Gene Information for TNF
gene_df = get_data('Genes')
tnf_df = gene_df[gene_df['GeneSymbol'] == 'TNF']
Get Chemical Interactions for TNF
chem_gene_df = get_data('ChemicalGeneInteractions')
tnf_chem_df = chem_gene_df[chem_gene_df['GeneSymbol'] == 'TNF']
Get Disease Hierarchy for Parkinson Disease
child_diseases = get_disease_hierarchy('MESH:D010300')
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distributions
No source distribution files available for this release.See tutorial on generating distribution archives.
Built Distribution
Close
Hashes for ctd_python-0.0.1-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | b413f69e7b04f8bb15048a61b9a514801b87a476bb311ef76cd030e21d7de504 |
|
MD5 | b045d9094f5657c05c61633942f447e8 |
|
BLAKE2b-256 | 614634df61a13a486473086ea7ef7f0568d8c46217ab9de39e9fa7fd675583a3 |