cumulus-library-covid 0.1.2

SQL generation for cumulus covid symptom analysis

Cumulus Library - Covid

A collection of tables for generating bioinfomatics data for studying COVID-19 symptoms. Part of the SMART on FHIR Cumulus Project

For more information, browse the documentation.

Usage

To install the module, simply run pip install cumulus-library-covid.

This will add a covid_symptoms study target to cumulus-library.

Publications

The following publications leveraged this module:

A computable phenotype for patients with SARS-CoV2 testing that occurred outside the hospital Lijing Wang, Amy Zipursky, Alon Geva, Andrew J. McMurry, Kenneth D. Mandl, Timothy A. Miller medRxiv 2023.01.19.23284738; doi: https://doi.org/10.1101/2023.01.19.23284738 (Preprint)

The SMART Text2FHIR Pipeline Timothy A. Miller, Andrew J. McMurry, James Jones, Daniel Gottlieb, Kenneth D. Mandl medRxiv 2023.03.21.23287499; doi: https://doi.org/10.1101/2023.03.21.23287499 (Preprint)