Curie Util
Python Library to translate CURIEs to IRIs and vice versa. Python version based on the Java Implementation: https://github.com/prefixcommons/curie-util and the JavaScript Implementation: https://github.com/geneontology/curie-util-es5
Install
pip install curieutil
Usage
Retrieve a JSON-LD file such as: https://github.com/prefixcommons/biocontext/blob/master/registry/go_context.jsonld
import requests
url = 'https://raw.githubusercontent.com/prefixcommons/biocontext/master/registry/go_context.jsonld'
r = requests.get(url)
Then create a CurieUtil object:
from curieutil import CurieUtil
mapping = CurieUtil.parseContext(r.json())
curie = CurieUtil(mapping)
Get IRI
curie.getIri("ZFIN:ZDB-GENE-031112-7")
curie.getIri("MGI:MGI:34340")
Get CURIE
curie.getCurie("http://identifiers.org/zfin/ZDB-GENE-031112-7")
curie.getCurie("http://identifiers.org/mgi/MGI:34340")
Notes
1 maintainer
Metadata
1 maintainer
Release files for curieutil 0.0.5
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| curieutil-0.0.5.tar.gz | 3.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| curieutil-0.0.5-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 7.8 kB
Release files / curieutil-0.0.5.tar.gz
| Download URL | curieutil-0.0.5.tar.gz |
|---|---|
| Size | 3.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
f05630ecb2e2b7daf230836cc349dd7dff082d63d120936ac367d3e0fd1c8b6e
|
|
BLAKE2b-256 checksum How to use checksums |
eba127ac82b3eb4fb5c86e486370b470ab393b3b68985c38d16487df08e1ddd1
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.12.1 pkginfo/1.4.2 requests/2.21.0 setuptools/39.1.0 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.7.0
|
Release files / curieutil-0.0.5-py3-none-any.whl
| Download URL | curieutil-0.0.5-py3-none-any.whl |
|---|---|
| Size | 4.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
9fc035ce86b30abddad0d7b8c8aa27c52a62e2377e72c306d5ff33224d0b8c92
|
|
BLAKE2b-256 checksum How to use checksums |
b7f1661eb081e452e4b4ad78939ca3bcd5bebb600e078fcaaa061618f68a3fb3
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.12.1 pkginfo/1.4.2 requests/2.21.0 setuptools/39.1.0 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.7.0
|
