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GUI to visualize and process variant data

Project description

# Cutevariant

cutevariant is a light standalone viewer of genetic variation written in Python for Qt. It allows you to view and filter VCF and other format files.

![Cutevariant example](https://raw.githubusercontent.com/labsquare/CuteVariant-cpp/master/screencast.gif)

# Installation

pip install cutevariant # install cutevariant # run

## Developement in progress Complete rewrite from Cpp to Python

### To get tests running

git clone git@github.com:labsquare/cutevariant.git cd cutevariant virtualenv -p /usr/bin/python3 venv source ven/bin/activate make install_deps # install make run # start application make test # start tests

### Development & release cycle

Use [zest.releaser](https://zestreleaser.readthedocs.io) to handle the version and distribution through pypi.

pip install zest.releaser[recommended]

To yield a new release, use:

fullrelease

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