Automatically cut adapter / barcode / UMI from NGS data
Project description
✂️ CutSeq
How to install?
pip install cutseq
How to use?
cutseq -a "ACACGACGCTCTTCCGATCTX<XXXAGATCGGAAGAGCACACGTC" test_R1.fq.gz test_R2.fq.gz
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
cutseq-0.0.4.tar.gz
(6.3 kB
view details)
Built Distribution
File details
Details for the file cutseq-0.0.4.tar.gz.
File metadata
- Download URL: cutseq-0.0.4.tar.gz
- Upload date:
- Size: 6.3 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.0.0 CPython/3.9.19
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 949875532c3ae8a7a70304e3fbe4dc325b5e418165ae45ff55f2fd68073eeaf9 |
|
| MD5 | 26078fe481ff5869396f36f771fe890a |
|
| BLAKE2b-256 | d1f97f2d56d8b9ceef7250277cf44b5a3a67b1cafe5e730eb030004f4f99b257 |
File details
Details for the file cutseq-0.0.4-py3-none-any.whl.
File metadata
- Download URL: cutseq-0.0.4-py3-none-any.whl
- Upload date:
- Size: 9.1 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.0.0 CPython/3.9.19
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 506357dd4ae2f8cab9331071c54a2be56ee0e5dc1637c56ca88a7026c47ff689 |
|
| MD5 | 00088a6881769e2bdc2b63d6bf8efe09 |
|
| BLAKE2b-256 | 80a78b3bb660035259e8c0f53b2526e09837323f8054e37ba03d8976f5f48df7 |
