cwl-tes 0.1.0

Common workflow language reference implementation backended by a GA4GH Task Execution Service

[](https://travis-ci.org/common-workflow-language/cwl-tes) [](https://opensource.org/licenses/Apache-2.0)

# GA4GH CWL Task Execution

___cwl-tes___ submits your tasks to a TES server. Task submission is parallelized when possible.

[Funnel](https://ohsu-comp-bio.github.io/funnel) is an implementation of the [GA4GH task execution API](https://github.com/ga4gh/task-execution-schemas). It runs your dockerized tasks on slurm, htcondor, google compute engine, etc.

## Requirements

• Python 2.7

• [Docker](https://docs.docker.com/)

• [Funnel](https://ohsu-comp-bio.github.io/funnel)

## Quickstart

• Start the task server

` funnel server `

• Run your CWL tool/workflow

` cwl-tes --tes http://localhost:8000 tests/hashsplitter-workflow.cwl.yml --input tests/resources/test.txt `

## Install

To install from source:

` python setup.py install `

## Run the v1.0 conformance tests

To start a funnel server instance automatically and run all of the conformance tests:

` nosetests -w ./tests `

_A more manual approach:_

Start the funnel server.

` funnel server --config /path/to/config.yaml `

Make sure that TMPDIR is specified in the AllowedDirs of your Local storage configuration.

Run the tests.

` ./tests/run_conformance.sh `