Common workflow language reference implementation backended by a GA4GH Task Execution Service
Project description
[](https://travis-ci.org/common-workflow-language/cwl-tes) [](https://opensource.org/licenses/Apache-2.0)
# GA4GH CWL Task Execution
___cwl-tes___ submits your tasks to a TES server. Task submission is parallelized when possible.
[Funnel](https://ohsu-comp-bio.github.io/funnel) is an implementation of the [GA4GH task execution API](https://github.com/ga4gh/task-execution-schemas). It runs your dockerized tasks on slurm, htcondor, google compute engine, etc.
## Requirements
Python 2.7
[Docker](https://docs.docker.com/)
[Funnel](https://ohsu-comp-bio.github.io/funnel)
## Quickstart
Start the task server
` funnel server `
Run your CWL tool/workflow
` cwl-tes --tes http://localhost:8000 tests/hashsplitter-workflow.cwl.yml --input tests/resources/test.txt `
## Install
To install from source:
` python setup.py install `
## Run the v1.0 conformance tests
To start a funnel server instance automatically and run all of the conformance tests:
` nosetests -w ./tests `
_A more manual approach:_
Start the funnel server.
` funnel server --config /path/to/config.yaml `
Make sure that TMPDIR is specified in the AllowedDirs of your Local storage configuration.
Run the tests.
` ./tests/run_conformance.sh `
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