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## An Interactive Image Segmentation Filter for Multiplex Microscopy.

CyLinter is quality control software for identifying and removing cell segmentation instances corrupted by optical and/or image-processing artifacts in multiplex microscopy images. The tool is user-guided and comprises a set of modular and extensible QC modules instantiated in a configurable [Python]( Class object. Module results are cached to allow for dynamic restarts.

CyLinter development is led by [Greg Baker]( at the [Laboratory of Systems Pharmacology](, Harvard Medical School.

Funding: This work is supported by the following:

  • NCI grant U2C-CA233262: Pre-cancer Atlases of Cutaneous and Hematologic Origin

  • NIH grant U54CA225088: Systems Pharmacology of Therapeutic and Adverse Responses to Immune Checkpoint and Small Molecule Drugs

  • Ludwig Center at Harvard Medical School and the Ludwig Cancer Research Foundation


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