Cartesian Product for NumPy - 40x faster than NumPy + itertools.product
Project description
Cartesian Product for NumPy - 40x faster than NumPy + itertools.product
pip install cythoncartesian2
Tested against Windows / Python 3.11 / Anaconda
Cython (and a C/C++ compiler) must be installed
cartesian_product(*args, outputdtype=np.uint32, dtype=np.uint32):
Calculate the Cartesian product of input arrays.
Parameters:
- *args: Variable number of input arrays.
- outputdtype (numpy.dtype): Data type of the output array.
- dtype (numpy.dtype): Data type used for intermediate calculations. # be careful!
Returns:
- numpy.ndarray: Cartesian product of input arrays.
import random
from cythoncartesian2 import cartesian_product
import numpy as np
# Strings are NOT supported!
args=[[h*random.uniform(1,4) for h in (range(random.randint(2,9)))] for x in range(9)]
q=cartesian_product(*args,outputdtype=np.float32,dtype=np.uint32)
# array([[0. , 0. , 0. , ..., 0. , 0. ,
# 0. ],
# [3.529998 , 0. , 0. , ..., 0. , 0. ,
# 0. ],
# [0. , 3.715651 , 0. , ..., 0. , 0. ,
# 0. ],
# ...,
# [3.529998 , 7.956308 , 5.9014587, ..., 1.0379078, 7.9018135,
# 8.816498 ],
# [0. , 9.456019 , 5.9014587, ..., 1.0379078, 7.9018135,
# 8.816498 ],
# [3.529998 , 9.456019 , 5.9014587, ..., 1.0379078, 7.9018135,
# 8.816498 ]], dtype=float32)
args=[[h for h in (range(8))] for x in range(9)]
q=cartesian_product(*args,outputdtype=np.uint8,dtype=np.uint32)
# %timeit q=cartesian_product(*args,outputdtype=np.uint8,dtype=np.uint32)
# 1.63 s ± 36.2 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)
# %timeit (list(itertools.product(*args)))
# 11.3 s ± 180 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)
# %timeit q=np.array(list(itertools.product(*args)),dtype=np.uint8)
# 1min 6s ± 282 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)
# q
# Out[3]:
# array([[0, 0, 0, ..., 0, 0, 0],
# [1, 0, 0, ..., 0, 0, 0],
# [2, 0, 0, ..., 0, 0, 0],
# ...,
# [5, 7, 7, ..., 7, 7, 7],
# [6, 7, 7, ..., 7, 7, 7],
# [7, 7, 7, ..., 7, 7, 7]], dtype=uint8)
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