Simulates dynamic Flux Balance Analysis (dFBA) of a BiGG-formatted XML model and with kinetics data in the format of the BiGG-SABIO module.
Project description
Reaction kinetics data can be parameterized and simulated in a genome-scale metabolic model (GEM) through dynamic Flux Balance Analysis (FBA). The dFBApy module supports this method of computational biology through concise and efficient functionality around COBRApy , which is detailed in the following sections. Examples Notebook are available in the examples directory of the dFBApy GitHub repository. Please submit errors, inquiries, or suggestions as GitHub issues where they can be addressed.
Installation
dFBApy is installed in a command prompt, Powershell, Terminal, or Anaconda Command Prompt via pip:
pip install dfbapy
The full documentation is available on ReadTheDocs.
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