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Back-end for the Distributed Annotation 'n' Enrichment (DANE) system

Project description

DANE-server

DANE-server is the back-end component of DANE and takes care of task routing as well as the (meta)data storage. A task submitted to DANE-server is registered in a database, and then its .run() function is called. Running a task involves assigning it to a worker via a message queue.

A specific task is run by publishing the task to a RabbitMQ Topic Exchange, on this exchange the task is routed based on its Task Key. The task key corresponds to the binding_key of a worker, and each worker with this binding_key listens to a shared queue. Once a worker is available it will take the next task from the queue and process it.

DANE-server depends on the DANE package for the logic of how to iterate over tasks, and how to interpret a task in general.

Installation

DANE-server has been tested with Python 3 and is installable through pip:

pip install dane-server

Besides the python base, the DANE-server also relies on an Elasticsearch server (version 7.9) for storage, and RabbitMQ (tested with version 3.7) for messaging.

After installing all dependencies it is necessary to configure the DANE server, how to do this is described here: https://dane.readthedocs.io/en/latest/intro.html#configuration

The base config for DANE-server consists of the following parameters, which you might want to overwrite:

LOGGING: 
    DIR: "./dane-server-logs/"
    LEVEL: "DEBUG"
DANE_SERVER:
    TEMP_FOLDER: "/home/DANE/DANE-data/TEMP/"
    OUT_FOLDER: "/home/DANE/DANE-data/OUT/"

Usage

NOTE: DANE-server is still in development, as such authorisation (amongst other featueres) has not yet been added. Use at your own peril.

Run the server component (which listens to the RabbitMQ) as follows:

dane-server

Besides the server component we also need the API, which we can start with:

dane-api

If no errors occur then this should start a webserver (at port 5500) which will handle API requests, while in the background the server will handle interaction with the DB and RabbitMQ.

API

The DANE api is documented with a swagger UI, available at: http://localhost:5500/DANE/

Examples

Examples of how to work with DANE can be found at: https://dane.readthedocs.io/en/latest/examples.html

Project details


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