dareplane-utils 0.0.9

Default utilities for the dareplane platform

Dareplane Python Utils

This module includes utilities for python which are used within the dareplane framework. It contains functionality which shared can be reused within multiple modules. This currently includes:

1. A DefaultServer - which will be loaded an extended within each module to implement the dareplane API
2. logging - which contains the standard formatting and a SocketHandler which is modified to send json representations of the logging records to the default logging server port (9020). This is used to enable cross process logging.
3. A StreamWatcher implementation - which is a utility class to query a single LSL stream into a ring buffer.

Default Dareplane Server

This default server is used by all Dareplane python modules as a starting point for their TCP socket. The idea is to have a single source for common functionality and patch everything that is model specific on top of this

Functional incarnations

Currently we are faced with two functional incarnations of servers

1. Spawning functionality from the server in a separate thread, being linked via events to the main thread (usually the server).
2. Spawning a subprocess for running functionality - Currently necessary for running psychopy as it cannot be run from outside the main thread.

Logging

The logging tools allow two main entry point, which are from dareplane_utils.logging.logger import get_logger, which is used to get a logger with the default configuration and from dareplane_utils.logging.server import LogRecordSocketReceiver which is used to spawn up a server for consolidating logs of different processes.

StreamWatcher

StreamWatcher are a convenient utility around LSL stream inlets. They are basically a ring buffer for reading data to a numpy array. StreamWatchers are:

1. initialized with a target stream name and a buffer size in seconds specified by buffer_size
2. connected to the target LSL stream
3. updated to fetch the latest data (usually done in a loop)

initialize a StreamWatcher

from dareplane_utils.stream_watcher.lsl_stream_watcher import StreamWatcher

STREAM_NAME = "my_stream"
BUFFER_SIZE_S = 5   # the required buffer size will be calculated from the LSL
                    # streams meta data

sw = StreamWatcher(
    STREAM_NAME,
    buffer_size_s=BUFFER_SIZE_S,
)

connect to the stream

# Either use the self.name or a provided identifier dict to hook up to an LSL stream
sw.connect_to_stream()

update

sw.update()

Update will call the following method:

    def update(self):
        """Look for new data and update the buffer"""
        samples, times = self.inlet.pull_chunk()
        self.add_samples(samples, times)
        self.samples = samples
        self.n_new += len(samples)

Getting data

To get the data from the StreamWatcher you can either grab the full ring buffer from the instance attributes

sw.buffer    # ring buffer for data
sw.buffer_t  # ring buffer for time stamps
sw.curr_i    # current position of the head in the ring buffer

or you usually want the more convenient way by using the unfold_buffer method, which returns a chronologically sorted array ([-1] is the most recent data point and [0] is the oldest data point).

sw.unfold_buffer()     # sorted data
sw.unfold_buffer_t()   # sorted time stamps


## The above is using the following implementation
    def unfold_buffer(self):
        return np.vstack(
            [self.buffer[self.curr_i :], self.buffer[: self.curr_i]]
        )

TODO

• channel names are only initialized on connection