Skip to main content

DataLad extension for CBBS imaging platform workflows

Project description

 ____          _           _                 _
|  _ \   __ _ | |_   __ _ | |      __ _   __| |
| | | | / _` || __| / _` || |     / _` | / _` |
| |_| || (_| || |_ | (_| || |___ | (_| || (_| |
|____/  \__,_| \__| \__,_||_____| \__,_| \__,_|
                                          Hirni

Travis tests status codecov.io Documentation License: MIT GitHub release PyPI version fury.io Average time to resolve an issue Percentage of issues still open

This extension enhances DataLad (http://datalad.org) with support for (semi-)automated, reproducible processing of (medical/neuro)imaging data. Please see the extension documentation for a description on additional commands and functionality.

For general information on how to use or contribute to DataLad (and this extension), please see the DataLad website or the main GitHub project page.

Installation

Before you install this package, please make sure that you install a recent version of git-annex. Afterwards, install the latest version of datalad-hirni from PyPi. It is recommended to use a dedicated virtualenv:

# create and enter a new virtual environment (optional)
virtualenv --system-site-packages --python=python3 ~/env/datalad
. ~/env/datalad/bin/activate

# install from PyPi
pip install datalad_hirni

# alternative: install the latest development version from GitHub
pip install git+https://github.com/psychoinformatics-de/datalad-hirni.git#egg=datalad_hirni

Support

The documentation of this project is found here: http://docs.datalad.org/projects/hirni The documentation is built from this very repository’s files under docs/source and thus you can contribute to the docs by opening a pull request just like you’d contribute to the code itself.

All bugs, concerns and enhancement requests for this software can be submitted here: https://github.com/psychoinformatics-de/datalad-hirni/issues

If you have a problem or would like to ask a question about how to use DataLad, please submit a question to NeuroStars.org with a datalad tag. NeuroStars.org is a platform similar to StackOverflow but dedicated to neuroinformatics.

All previous DataLad questions are available here: http://neurostars.org/tags/datalad/

Acknowledgements

DataLad development is supported by a US-German collaboration in computational neuroscience (CRCNS) project “DataGit: converging catalogues, warehouses, and deployment logistics into a federated ‘data distribution’” (Halchenko/Hanke), co-funded by the US National Science Foundation (NSF 1429999) and the German Federal Ministry of Education and Research (BMBF 01GQ1411). Additional support is provided by the German federal state of Saxony-Anhalt and the European Regional Development Fund (ERDF), Project: Center for Behavioral Brain Sciences, Imaging Platform.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for datalad-hirni, version 0.0.5
Filename, size File type Python version Upload date Hashes
Filename, size datalad_hirni-0.0.5-py2.py3-none-any.whl (204.9 kB) File type Wheel Python version py2.py3 Upload date Hashes View hashes
Filename, size datalad_hirni-0.0.5.tar.gz (189.8 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page